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Pokémon Super Mystery Dungeon (ポケモン超不思議のダンジョン Pokémon Super Mystery Dungeon) is a Nintendo 3DS game in the Mystery Dungeon series.
- Alakazam. Leader of the infamous Team A.C.T
- Charizard. Team A.C.T
- Tyranitar. Team A.C.T
- Whiscash. The elder of Whiscash pond in Red and Blue rescue team
- Armaldo. A former outlaw turned treasure hunter and Wigglytuff's mentor in Explorers of Sky
- Lopunny. Leader of Team Charm treasure hunters in Explorers of Time, Darkness and Sky
- Medicham. Team Charm
- Gardevoir. Team Charm
- Butterfree. Caterpie's mother in Red and Blue rescue team
- Caterpie. Became the hero of Red and Blue rescue team's first rescue
- Virizion. One of the 3 legendary Swords of Justice and one of Keldeo's protectors
- Emolga. Explorer of the magnangates in Gates to Infinity
- Dunsparce. Rather weak and wimpy explorer of the magnangates in Gates to Infinity
- Gengar. Formerly human turned into a pokemon by Ninetales in Red and Blue rescue team. Formerly lead Team Meanies until he disbanded the team and disappeared after the resurrection of Gardevoir
- Ninetales. Turned a selfish human (Gengar) into a pokemon creating its own legend in Red and Blue rescue team
- Absol. Joined the Player's party to find Ninetales in Red/Blue Rescue Team
- Umbreon. Adventured through special portals called magnagates with his partner Espeon
- Espeon. Adventured through special portals called magnagates with her partner Umbreon
- Wigglytuff. Leader of the Wigglytuff guild in Explorers of time, darkness and sky
- Chatot. Member of the Wigglytuff guild in Explorers of time, darkness and sky
- Corphish. Member of the wiggltuff guild in Explorers of time, Darkness and Sky. Ran the Swap Cauldron
- Bidoof. Member of the Wigglytuff guild in explorers of time, darkness and Sky
- Sunflora. Member of the Wigglytuff guild in explorers of Time, Darkness and Sky
- Chimecho. Member of the Wigglytuff guild in Explorers of Time, Darkness and Sky. Managed the Player's team members.
- Loudred. Member of the Wigglytuff guild in explorers of time, darkness and sky. Ran Sentry Duty with Diglett
- Rampardos. Ran the Box Buster in Gates to Infinity
- Cinccino. Ran the Gift Shop in Gates to Infinity
- Swanna. Ran the Post Town Inn in Gates to Infinity
- Persian. Ran Felicity Bank in Red/Blue Rescue Team
- Duskull. Ran Duskull Bank in Explorers of Darkness/Time/Sky
- Makuhita. Ran the Makuhita Dojo in Red/Blue Rescue Team
- Marowak. Ran the Marowak Dojo in Explorers of Darkness/Time/Sky
- Skuntank. Leader of team Skull in Explorers of Darkness/Time/Sky
- Victini. Ran the V-Wheel in Gates to Infinity
- Magnezone. Police Chief in Explorers of Darkness/Time/Sky
- Munna. Villain from Gates to Infinity
- Certain dungeons may have a low amount of floors, but they are hard to get through matching the difficulty of high level dungeons from the previous Mystery Dungeon games.
- Instead of the main hero disappearing and being brought back, that fate is the destiny of the partner. Mew temporarily takes the partner's place.
- This is the second Mystery Dungeon game that involves the final boss being a non-Pokémon enemy. The first was the Bittercold from Gates to Infinity.
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